| 1. | Alania Vladikavkaz | 32 | 27 | 3 | 2 | 81:20 | 61 | 84 | |
| 2. | SKA Rostov | 32 | 26 | 4 | 2 | 74:17 | 57 | 82 | |
| 3. | Chernomorets Novorossijsk | 32 | 20 | 7 | 5 | 57:31 | 26 | 67 | |
| 4. | Spartak-UGP Anapa | 32 | 20 | 6 | 6 | 78:35 | 43 | 66 | |
| 5. | Olimpia Volgograd | 32 | 20 | 3 | 9 | 57:32 | 25 | 63 | |
| 6. | R. Volgograd | 32 | 17 | 4 | 11 | 62:48 | 14 | 55 | |
| 7. | Kavkaztransgaz-2005 Ryzdvyany | 32 | 13 | 10 | 9 | 44:38 | 6 | 49 | |
| 8. | Dynamo Stavropol | 32 | 11 | 7 | 14 | 48:39 | 9 | 40 | |
| 9. | Sochi-04 | 32 | 10 | 7 | 15 | 36:51 | -15 | 37 | |
| 10. | Avtodor V. | 32 | 10 | 7 | 15 | 41:51 | -10 | 37 | |
| 11. | Maykop | 32 | 10 | 6 | 16 | 36:48 | -12 | 36 | |
| 12. | FK Elista | 32 | 10 | 4 | 18 | 38:76 | -38 | 34 | |
| 13. | Kaspiysk | 32 | 9 | 7 | 16 | 33:56 | -23 | 34 | |
| 14. | Taganrog | 32 | 7 | 7 | 18 | 35:52 | -17 | 28 | |
| 15. | FK Krasnodar-2000 | 32 | 7 | 4 | 21 | 35:66 | -31 | 25 | |
| 16. | Astrakhan | 32 | 5 | 5 | 22 | 27:63 | -36 | 20 | |
| 17. | Tekstilshchik K. | 32 | 2 | 5 | 25 | 24:83 | -59 | 11 | |