| 1. | SKA Rostov | 16 | 0 | 0 | 0 | 15 | 1 | 0 | 0 | 0 | 0 | 46 |
| 2. | Alania Vladikavkaz | 16 | 0 | 0 | 0 | 13 | 2 | 1 | 0 | 0 | 0 | 41 |
| 3. | Spartak-UGP Anapa | 16 | 0 | 0 | 0 | 13 | 2 | 1 | 0 | 0 | 0 | 41 |
| 4. | R. Volgograd | 16 | 0 | 0 | 0 | 13 | 1 | 2 | 0 | 0 | 0 | 40 |
| 5. | Chernomorets Novorossijsk | 16 | 0 | 0 | 0 | 12 | 2 | 2 | 0 | 0 | 0 | 38 |
| 6. | Olimpia Volgograd | 16 | 0 | 0 | 0 | 11 | 1 | 4 | 0 | 0 | 0 | 34 |
| 7. | Avtodor V. | 16 | 0 | 0 | 0 | 9 | 4 | 3 | 0 | 0 | 0 | 31 |
| 8. | Maykop | 16 | 0 | 0 | 0 | 8 | 4 | 4 | 0 | 0 | 0 | 28 |
| 9. | Kavkaztransgaz-2005 Ryzdvyany | 16 | 0 | 0 | 0 | 8 | 4 | 4 | 0 | 0 | 0 | 28 |
| 10. | Taganrog | 16 | 0 | 0 | 0 | 7 | 4 | 5 | 0 | 0 | 0 | 25 |
| 11. | Dynamo Stavropol | 16 | 0 | 0 | 0 | 7 | 4 | 5 | 0 | 0 | 0 | 25 |
| 12. | Kaspiysk | 16 | 0 | 0 | 0 | 7 | 2 | 7 | 0 | 0 | 0 | 23 |
| 13. | FK Elista | 16 | 0 | 0 | 0 | 6 | 2 | 8 | 0 | 0 | 0 | 20 |
| 14. | FK Krasnodar-2000 | 16 | 0 | 0 | 0 | 6 | 2 | 8 | 0 | 0 | 0 | 20 |
| 15. | Sochi-04 | 16 | 0 | 0 | 0 | 5 | 4 | 7 | 0 | 0 | 0 | 19 |
| 16. | Astrakhan | 16 | 0 | 0 | 0 | 4 | 4 | 8 | 0 | 0 | 0 | 16 |
| 17. | Tekstilshchik K. | 16 | 0 | 0 | 0 | 1 | 5 | 10 | 0 | 0 | 0 | 8 |