| # | Group A1 | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | El Kanemi | 9 | 3 | 3 | 3 | 10:8 | 2 | 12 | |
| 2. | Sokoto | 9 | 2 | 3 | 4 | 8:11 | -3 | 9 | |
| 3. | Mighty Jets | 9 | 2 | 0 | 7 | 6:11 | -5 | 6 | |
| 4. | ABS | 9 | 1 | 3 | 5 | 9:16 | -7 | 6 | |
| 5. | City FC Abuja | 9 | 1 | 3 | 5 | 6:13 | -7 | 6 | |
| 6. | EFCC | 9 | 2 | 0 | 7 | 3:14 | -11 | 6 | |
| 7. | Yobe Stars | 9 | 1 | 2 | 6 | 3:12 | -9 | 5 | |
| 8. | FWC Champions | 10 | 1 | 1 | 8 | 6:17 | -11 | 4 | |
| 9. | Zamfara United | 9 | 0 | 1 | 8 | 4:19 | -15 | 1 | |
| 10. | Oyah Sports | 8 | 0 | 0 | 8 | 2:21 | -19 | 0 | |
| # | Group A2 | MP | W | D | L | G | GD | Pts | Form |
| 1. | Doma United | 10 | 2 | 3 | 5 | 8:12 | -4 | 9 | |
| 2. | Nigeria Airforce FC | 10 | 2 | 0 | 8 | 7:19 | -12 | 6 | |
| 3. | Kebbi | 10 | 1 | 2 | 7 | 6:18 | -12 | 5 | |
| 4. | Malumfashi | 10 | 1 | 1 | 8 | 5:16 | -11 | 4 | |
| 5. | Kogi | 10 | 0 | 4 | 6 | 5:16 | -11 | 4 | |
| 6. | DMD | 10 | 0 | 3 | 7 | 6:18 | -12 | 3 | |
| 7. | Green Beret | 10 | 0 | 2 | 8 | 3:12 | -9 | 2 | |
| 8. | Road Safety | 10 | 0 | 1 | 9 | 1:12 | -11 | 1 | |
| 9. | JM Liberty | 10 | 0 | 1 | 9 | 4:17 | -13 | 1 | |
| 10. | Jigawa Golden Stars | 10 | 0 | 1 | 9 | 1:15 | -14 | 1 | |
| 11. | Adamawa Utd | 10 | 0 | 0 | 10 | 2:18 | -16 | 0 | |
| # | Group B1 | MP | W | D | L | G | GD | Pts | Form |
| 1. | Bendel | 11 | 4 | 4 | 3 | 7:6 | 1 | 16 | |
| 2. | Gateway Utd. | 11 | 2 | 3 | 6 | 7:13 | -6 | 9 | |
| 3. | J'Atete | 11 | 2 | 2 | 7 | 5:15 | -10 | 8 | |
| 4. | Ibom Youths | 11 | 1 | 4 | 6 | 10:18 | -8 | 7 | |
| 5. | Vandrezzer | 11 | 1 | 3 | 7 | 4:11 | -7 | 6 | |
| 6. | Ikorodu City | 11 | 1 | 3 | 7 | 8:16 | -8 | 6 | |
| 7. | Abeokuta | 11 | 1 | 3 | 7 | 6:14 | -8 | 6 | |
| 8. | Ekiti United | 11 | 1 | 0 | 10 | 4:25 | -21 | 3 | |
| 9. | Giant Brillars | 11 | 0 | 2 | 9 | 5:17 | -12 | 2 | |
| 10. | Campos | 11 | 0 | 1 | 10 | 3:19 | -16 | 1 | |
| 11. | Adoration | 11 | 0 | 1 | 10 | 3:22 | -19 | 1 | |
| 12. | Osun | 11 | 0 | 0 | 11 | 8:31 | -23 | 0 | |
| # | Group B2 | MP | W | D | L | G | GD | Pts | Form |
| 1. | Bayelsa United | 12 | 2 | 4 | 6 | 10:14 | -4 | 10 | |
| 2. | Warri Wolves | 12 | 1 | 3 | 8 | 5:14 | -9 | 6 | |
| 3. | Crown FC | 12 | 1 | 3 | 8 | 9:21 | -12 | 6 | |
| 4. | Cynosure | 12 | 1 | 2 | 9 | 3:12 | -9 | 5 | |
| 5. | Rovers FC | 12 | 1 | 2 | 9 | 4:16 | -12 | 5 | |
| 6. | Ijebu | 12 | 1 | 2 | 9 | 8:21 | -13 | 5 | |
| 7. | Go Round | 12 | 1 | 2 | 9 | 5:18 | -13 | 5 | |
| 8. | One Rocket | 12 | 0 | 3 | 9 | 5:17 | -12 | 3 | |
| 9. | Sporting Lagos | 12 | 0 | 3 | 9 | 4:16 | -12 | 3 | |
| 10. | Edel | 12 | 0 | 2 | 10 | 7:21 | -14 | 2 | |
| 11. | Apex Krane | 12 | 0 | 2 | 10 | 6:23 | -17 | 2 | |
| 12. | Abia Comets | 12 | 0 | 1 | 11 | 7:22 | -15 | 1 | |
| 13. | Ottasolo | 12 | 0 | 1 | 11 | 5:31 | -26 | 1 |