| # | Team | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | V-Varen Nagasaki | 21 | 14 | 4 | 3 | 37:15 | 22 | 46 | |
| 2. | Tokushima | 21 | 11 | 7 | 3 | 33:11 | 22 | 40 | |
| 3. | Kyoto | 21 | 12 | 4 | 5 | 33:21 | 12 | 40 | |
| 4. | Giravanz Kitakyushu | 21 | 12 | 4 | 5 | 30:19 | 11 | 40 | |
| 5. | Avispa Fukuoka | 21 | 12 | 4 | 5 | 26:16 | 10 | 40 | |
| 6. | Iwata | 21 | 11 | 6 | 4 | 38:21 | 17 | 39 | |
| 7. | Kofu | 21 | 10 | 7 | 4 | 25:19 | 6 | 37 | |
| 8. | Montedio Yamagata | 21 | 11 | 3 | 7 | 36:22 | 14 | 36 | |
| 9. | Omiya Ardija | 21 | 8 | 8 | 5 | 24:22 | 2 | 32 | |
| 10. | Machida | 21 | 7 | 9 | 5 | 23:19 | 4 | 30 | |
| 11. | Okayama | 21 | 8 | 6 | 7 | 25:24 | 1 | 30 | |
| 12. | Yamaga | 21 | 7 | 8 | 6 | 24:26 | -2 | 29 | |
| 13. | Tochigi SC | 21 | 7 | 7 | 7 | 21:18 | 3 | 28 | |
| 14. | Ryukyu | 21 | 7 | 6 | 8 | 34:26 | 8 | 27 | |
| 15. | Mito | 21 | 7 | 6 | 8 | 31:32 | -1 | 27 | |
| 16. | Verdy | 21 | 6 | 8 | 7 | 23:21 | 2 | 26 | |
| 17. | Albirex Niigata | 21 | 6 | 8 | 7 | 27:30 | -3 | 26 | |
| 18. | Kanazawa | 21 | 6 | 7 | 8 | 27:31 | -4 | 25 | |
| 19. | Renofa Yamaguchi | 21 | 7 | 2 | 12 | 24:33 | -9 | 23 | |
| 20. | Chiba | 21 | 6 | 4 | 11 | 22:31 | -9 | 22 | |
| 21. | Kusatsu | 21 | 6 | 1 | 14 | 17:36 | -19 | 19 | |
| 22. | Ehime | 21 | 3 | 4 | 14 | 14:32 | -18 | 13 |