| # | Team | MP | W/W | W/D | W/L | D/W | D/D | D/L | L/W | L/D | L/L | Pts |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | Kumamoto | 21 | 5 | 1 | 0 | 4 | 3 | 1 | 1 | 3 | 3 | 37 |
| 2. | Yokohama FC | 21 | 5 | 5 | 0 | 5 | 1 | 3 | 0 | 1 | 1 | 37 |
| 3. | V-Varen Nagasaki | 21 | 8 | 1 | 0 | 2 | 2 | 2 | 1 | 0 | 5 | 36 |
| 4. | Albirex Niigata | 21 | 6 | 0 | 0 | 3 | 5 | 3 | 0 | 2 | 2 | 34 |
| 5. | Vegalta Sendai | 21 | 6 | 2 | 1 | 4 | 2 | 5 | 0 | 0 | 1 | 34 |
| 6. | Oita Trinita | 21 | 7 | 1 | 0 | 1 | 5 | 1 | 0 | 2 | 4 | 32 |
| 7. | Chiba | 21 | 4 | 1 | 1 | 4 | 4 | 2 | 1 | 0 | 4 | 32 |
| 8. | Blaublitz | 21 | 5 | 0 | 0 | 4 | 4 | 4 | 0 | 1 | 3 | 32 |
| 9. | Okayama | 21 | 6 | 2 | 0 | 1 | 2 | 4 | 1 | 3 | 2 | 31 |
| 10. | Kanazawa | 21 | 5 | 2 | 0 | 3 | 3 | 2 | 0 | 1 | 5 | 30 |
| 11. | Tochigi SC | 21 | 4 | 2 | 0 | 3 | 5 | 3 | 0 | 0 | 4 | 28 |
| 12. | Montedio Yamagata | 21 | 4 | 3 | 0 | 2 | 2 | 3 | 0 | 4 | 3 | 27 |
| 13. | Tokushima | 21 | 4 | 3 | 0 | 1 | 9 | 2 | 0 | 0 | 2 | 27 |
| 14. | Verdy | 21 | 0 | 2 | 0 | 5 | 5 | 1 | 1 | 1 | 6 | 26 |
| 15. | Mito | 21 | 2 | 0 | 1 | 2 | 6 | 1 | 2 | 1 | 6 | 25 |
| 16. | Machida | 21 | 6 | 0 | 1 | 0 | 2 | 2 | 1 | 1 | 8 | 24 |
| 17. | Kofu | 21 | 2 | 1 | 0 | 3 | 5 | 2 | 0 | 1 | 7 | 22 |
| 18. | Kusatsu | 21 | 4 | 0 | 1 | 2 | 2 | 4 | 0 | 1 | 7 | 21 |
| 19. | Ryukyu | 21 | 2 | 0 | 0 | 2 | 5 | 6 | 1 | 0 | 5 | 20 |
| 20. | Renofa Yamaguchi | 21 | 3 | 0 | 1 | 2 | 3 | 4 | 0 | 1 | 7 | 19 |
| 21. | Grulla Morioka | 21 | 3 | 0 | 0 | 1 | 1 | 1 | 1 | 3 | 11 | 19 |
| 22. | Omiya Ardija | 21 | 3 | 1 | 0 | 1 | 4 | 4 | 0 | 1 | 7 | 18 |