| # | Group A | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | PSMS Medan | 3 | 3 | 0 | 0 | 4:1 | 3 | 9 | |
| 2. | Persiraja Aceh | 4 | 3 | 0 | 1 | 5:5 | 0 | 9 | |
| 3. | Sriwijaya | 3 | 2 | 1 | 0 | 5:2 | 3 | 7 | |
| 4. | Semen Padang | 2 | 2 | 0 | 0 | 8:0 | 8 | 6 | |
| 5. | Sada Sumut | 2 | 2 | 0 | 0 | 4:0 | 4 | 6 | |
| 6. | Perserang Serang | 3 | 2 | 0 | 1 | 3:2 | 1 | 6 | |
| 7. | PSDS Deli Serdang | 3 | 1 | 2 | 0 | 3:2 | 1 | 5 | |
| 8. | PSKC Cimahi | 4 | 1 | 1 | 2 | 2:3 | -1 | 4 | |
| 9. | PSPS Riau | 3 | 0 | 1 | 2 | 4:6 | -2 | 1 | |
| # | Group B | MP | W | D | L | G | GD | Pts | Form |
| 1. | Bekasi City | 4 | 4 | 0 | 0 | 8:1 | 7 | 12 | |
| 2. | Gresik | 3 | 2 | 1 | 0 | 4:0 | 4 | 7 | |
| 3. | PSIM Yogyakarta | 3 | 2 | 1 | 0 | 5:2 | 3 | 7 | |
| 4. | Persijap Jepara | 4 | 2 | 1 | 1 | 4:3 | 1 | 7 | |
| 5. | Persekat | 5 | 1 | 3 | 1 | 3:3 | 0 | 6 | |
| 6. | Persipa Pati | 3 | 1 | 2 | 0 | 5:3 | 2 | 5 | |
| 7. | Persela Lamongan | 3 | 1 | 1 | 1 | 6:6 | 0 | 4 | |
| 8. | PSCS Cilacap | 3 | 0 | 2 | 1 | 3:4 | -1 | 2 | |
| 9. | Persikab | 3 | 0 | 2 | 1 | 1:2 | -1 | 2 | |
| 10. | Nusantara | 4 | 0 | 2 | 2 | 1:3 | -2 | 2 | |
| # | Group C | MP | W | D | L | G | GD | Pts | Form |
| 1. | Deltras Sidoarjo | 3 | 3 | 0 | 0 | 11:2 | 9 | 9 | |
| 2. | Balikpapan | 3 | 3 | 0 | 0 | 10:2 | 8 | 9 | |
| 3. | Sulut Utd | 4 | 3 | 0 | 1 | 7:4 | 3 | 9 | |
| 4. | Persewar Waropen | 4 | 2 | 2 | 0 | 8:3 | 5 | 8 | |
| 5. | Persipal BU | 4 | 2 | 2 | 0 | 3:1 | 2 | 8 | |
| 6. | Persipura Jayapura | 3 | 2 | 1 | 0 | 6:1 | 5 | 7 | |
| 7. | Putra Delta | 2 | 2 | 0 | 0 | 6:2 | 4 | 6 | |
| 8. | PSBS Biak Numfor | 2 | 1 | 1 | 0 | 1:0 | 1 | 4 | |
| 9. | Kalteng Putra | 1 | 0 | 1 | 0 | 0:0 | 0 | 1 |