| # | East | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | Persik Kediri | 20 | 9 | 6 | 5 | 26:15 | 11 | 33 | |
| 2. | Persewar Waropen | 20 | 9 | 4 | 7 | 22:18 | 4 | 31 | |
| 3. | Dewa United | 20 | 8 | 7 | 5 | 18:18 | 0 | 31 | |
| 4. | Mitra Kukar | 20 | 8 | 6 | 6 | 17:17 | 0 | 30 | |
| 5. | Persis Solo | 20 | 8 | 6 | 6 | 18:16 | 2 | 30 | |
| 6. | Sulut Utd | 20 | 8 | 5 | 7 | 22:17 | 5 | 29 | |
| 7. | PSIM Yogyakarta | 20 | 9 | 0 | 11 | 21:23 | -2 | 27 | |
| 8. | Balikpapan | 20 | 8 | 3 | 9 | 23:20 | 3 | 27 | |
| 9. | PSBS Biak Numfor | 20 | 6 | 6 | 8 | 14:21 | -7 | 24 | |
| 10. | Madura FC | 20 | 6 | 5 | 9 | 15:19 | -4 | 23 | |
| 11. | Persatu Tuban | 20 | 6 | 2 | 12 | 17:29 | -12 | 20 | |
| # | West | MP | W | D | L | G | GD | Pts | Form |
| 1. | Persiraja Aceh | 22 | 14 | 0 | 8 | 36:23 | 13 | 42 | |
| 2. | Persita | 22 | 12 | 6 | 4 | 35:16 | 19 | 42 | |
| 3. | Sriwijaya | 22 | 12 | 4 | 6 | 26:17 | 9 | 40 | |
| 4. | PSMS Medan | 22 | 11 | 4 | 7 | 27:23 | 4 | 37 | |
| 5. | PSCS Cilacap | 22 | 10 | 6 | 6 | 31:21 | 10 | 36 | |
| 6. | Perserang Serang | 22 | 10 | 3 | 9 | 24:23 | 1 | 33 | |
| 7. | RANS Nusantara | 22 | 9 | 4 | 9 | 24:25 | -1 | 31 | |
| 8. | Muba United | 22 | 9 | 3 | 10 | 23:27 | -4 | 30 | |
| 9. | PSPS Riau | 22 | 7 | 5 | 10 | 25:33 | -8 | 26 | |
| 10. | Persibat Batang | 22 | 7 | 4 | 11 | 24:37 | -13 | 25 | |
| 11. | PSGC Ciamis | 22 | 6 | 1 | 15 | 24:38 | -14 | 19 | |
| 12. | Blitar United | 22 | 2 | 6 | 14 | 22:38 | -16 | 12 |