| # | Group A | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | Sparta Prague U21 | 22 | 15 | 4 | 3 | 52:24 | 28 | 49 | |
| 2. | Mlada Boleslav U21 | 22 | 12 | 4 | 6 | 46:35 | 11 | 40 | |
| 3. | Liberec U21 | 22 | 12 | 3 | 7 | 64:39 | 25 | 39 | |
| 4. | Bohemians 1905 U21 | 22 | 10 | 5 | 7 | 40:37 | 3 | 35 | |
| 5. | Plzen U21 | 22 | 11 | 2 | 9 | 45:45 | 0 | 35 | |
| 6. | Hradec Kralove U21 | 22 | 9 | 4 | 9 | 53:42 | 11 | 31 | |
| 7. | Pribram U21 | 22 | 9 | 4 | 9 | 53:56 | -3 | 31 | |
| 8. | Slavia Prague U21 | 22 | 9 | 2 | 11 | 47:45 | 2 | 29 | |
| 9. | Dukla Prague U21 | 22 | 8 | 5 | 9 | 46:55 | -9 | 29 | |
| 10. | Teplice U21 | 22 | 7 | 3 | 12 | 32:39 | -7 | 24 | |
| 11. | Ceske Budejovice U21 | 22 | 5 | 3 | 14 | 32:64 | -32 | 18 | |
| 12. | Jablonec U21 | 22 | 5 | 1 | 16 | 36:65 | -29 | 16 | |
| # | Group B | MP | W | D | L | G | GD | Pts | Form |
| 1. | Slovacko U21 | 21 | 13 | 3 | 5 | 54:32 | 22 | 42 | |
| 2. | Sigma Olomouc U21 | 21 | 11 | 5 | 5 | 62:38 | 24 | 38 | |
| 3. | Brno U21 | 21 | 10 | 5 | 6 | 49:37 | 12 | 35 | |
| 4. | Ostrava U21 | 21 | 10 | 4 | 7 | 46:40 | 6 | 34 | |
| 5. | Jihlava U21 | 21 | 7 | 4 | 10 | 39:49 | -10 | 25 | |
| 6. | Zlin U21 | 21 | 6 | 6 | 9 | 39:34 | 5 | 24 | |
| 7. | Karvina U21 | 21 | 7 | 2 | 12 | 27:43 | -16 | 23 | |
| 8. | Trinec U21 | 21 | 4 | 3 | 14 | 28:71 | -43 | 15 |