| # | Team | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | Yokohama FC | 21 | 12 | 6 | 3 | 27:15 | 12 | 42 | |
| 2. | Machida | 21 | 11 | 5 | 5 | 33:23 | 10 | 38 | |
| 3. | Kofu | 21 | 10 | 5 | 6 | 33:21 | 12 | 35 | |
| 4. | Yamaga | 21 | 9 | 8 | 4 | 26:20 | 6 | 35 | |
| 5. | Oita Trinita | 21 | 11 | 2 | 8 | 34:30 | 4 | 35 | |
| 6. | Albirex Niigata | 21 | 10 | 4 | 7 | 27:25 | 2 | 34 | |
| 7. | Omiya Ardija | 21 | 10 | 3 | 8 | 33:25 | 8 | 33 | |
| 8. | Kanazawa | 21 | 9 | 6 | 6 | 33:27 | 6 | 33 | |
| 9. | Renofa Yamaguchi | 21 | 8 | 9 | 4 | 34:32 | 2 | 33 | |
| 10. | Verdy | 21 | 8 | 8 | 5 | 25:21 | 4 | 32 | |
| 11. | Avispa Fukuoka | 21 | 7 | 7 | 7 | 27:25 | 2 | 28 | |
| 12. | Kyoto | 21 | 8 | 4 | 9 | 31:31 | 0 | 28 | |
| 13. | Ehime | 21 | 7 | 6 | 8 | 16:24 | -8 | 27 | |
| 14. | Mito | 21 | 7 | 5 | 9 | 18:29 | -11 | 26 | |
| 15. | Okayama | 21 | 7 | 4 | 10 | 15:23 | -8 | 25 | |
| 16. | Chiba | 21 | 7 | 3 | 11 | 31:37 | -6 | 24 | |
| 17. | Tochigi SC | 21 | 6 | 6 | 9 | 15:22 | -7 | 24 | |
| 18. | Montedio Yamagata | 21 | 5 | 7 | 9 | 18:26 | -8 | 22 | |
| 19. | Gifu | 21 | 6 | 4 | 11 | 20:35 | -15 | 22 | |
| 20. | Tokushima | 21 | 5 | 6 | 10 | 17:20 | -3 | 21 | |
| 21. | Kumamoto | 21 | 4 | 3 | 14 | 24:40 | -16 | 15 | |
| 22. | Kamatamare | 21 | 3 | 5 | 13 | 13:42 | -29 | 14 |