| # | Team | MP | W/W | W/D | W/L | D/W | D/D | D/L | L/W | L/D | L/L | Pts |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | Shonan Bellmare | 21 | 11 | 0 | 0 | 5 | 4 | 0 | 0 | 0 | 1 | 52 |
| 2. | Yamaga | 21 | 6 | 0 | 0 | 6 | 5 | 0 | 0 | 0 | 4 | 41 |
| 3. | Chiba | 21 | 7 | 1 | 0 | 4 | 3 | 0 | 1 | 1 | 4 | 41 |
| 4. | Oita Trinita | 21 | 6 | 0 | 1 | 7 | 1 | 3 | 0 | 1 | 2 | 41 |
| 5. | Giravanz Kitakyushu | 21 | 2 | 0 | 1 | 6 | 3 | 3 | 3 | 1 | 2 | 37 |
| 6. | Iwata | 21 | 5 | 4 | 0 | 5 | 1 | 0 | 0 | 1 | 5 | 36 |
| 7. | Hokkaido Consadole Sapporo | 21 | 6 | 1 | 0 | 3 | 4 | 2 | 0 | 3 | 2 | 35 |
| 8. | Montedio Yamagata | 21 | 5 | 0 | 2 | 4 | 3 | 4 | 1 | 0 | 2 | 33 |
| 9. | Yokohama FC | 21 | 6 | 1 | 0 | 2 | 5 | 0 | 0 | 0 | 7 | 30 |
| 10. | Tochigi SC | 21 | 5 | 1 | 0 | 3 | 2 | 1 | 0 | 3 | 6 | 30 |
| 11. | Kyoto | 21 | 1 | 0 | 0 | 3 | 10 | 1 | 1 | 4 | 1 | 29 |
| 12. | Gifu | 21 | 5 | 2 | 1 | 2 | 2 | 3 | 1 | 1 | 4 | 29 |
| 13. | Kusatsu | 21 | 4 | 0 | 1 | 4 | 2 | 2 | 0 | 3 | 5 | 29 |
| 14. | Okayama | 21 | 2 | 1 | 1 | 3 | 8 | 1 | 1 | 2 | 2 | 29 |
| 15. | Ehime | 21 | 5 | 1 | 1 | 3 | 3 | 2 | 0 | 0 | 6 | 28 |
| 16. | V-Varen Nagasaki | 21 | 2 | 2 | 0 | 3 | 6 | 1 | 0 | 2 | 5 | 25 |
| 17. | Avispa Fukuoka | 21 | 5 | 0 | 1 | 2 | 3 | 4 | 0 | 1 | 5 | 25 |
| 18. | Kumamoto | 21 | 3 | 2 | 1 | 2 | 5 | 4 | 1 | 0 | 3 | 25 |
| 19. | Mito | 21 | 4 | 0 | 1 | 0 | 7 | 5 | 1 | 1 | 2 | 23 |
| 20. | Verdy | 21 | 2 | 2 | 0 | 2 | 4 | 4 | 0 | 2 | 5 | 20 |
| 21. | Kamatamare | 21 | 1 | 1 | 0 | 3 | 1 | 7 | 0 | 3 | 5 | 17 |
| 22. | Toyama | 21 | 0 | 0 | 2 | 3 | 4 | 7 | 0 | 1 | 4 | 14 |