| # | Team | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | Yokohama FC | 48 | 26 | 15 | 7 | 61:32 | 29 | 93 | |
| 2. | Kashiwa Reysol | 48 | 27 | 7 | 14 | 84:60 | 24 | 88 | |
| 3. | Vissel Kobe | 48 | 25 | 11 | 12 | 78:53 | 25 | 86 | |
| 4. | Sagan Tosu | 48 | 22 | 13 | 13 | 64:49 | 15 | 79 | |
| 5. | Vegalta Sendai | 48 | 21 | 14 | 13 | 75:43 | 32 | 77 | |
| 6. | Hokkaido Consadole Sapporo | 48 | 20 | 12 | 16 | 77:67 | 10 | 72 | |
| 7. | Verdy | 48 | 21 | 8 | 19 | 69:75 | -6 | 71 | |
| 8. | Montedio Yamagata | 48 | 17 | 14 | 17 | 68:57 | 11 | 65 | |
| 9. | Ehime | 48 | 14 | 11 | 23 | 51:63 | -12 | 53 | |
| 10. | Mito | 48 | 14 | 9 | 25 | 48:69 | -21 | 51 | |
| 11. | Shonan Bellmare | 48 | 13 | 10 | 25 | 61:87 | -26 | 49 | |
| 12. | Kusatsu | 48 | 9 | 15 | 24 | 54:86 | -32 | 42 | |
| 13. | Tokushima | 48 | 8 | 11 | 29 | 43:92 | -49 | 35 |