| # | Team | MP | W/W | W/D | W/L | D/W | D/D | D/L | L/W | L/D | L/L | Pts |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | Kyoto | 44 | 0 | 0 | 0 | 30 | 7 | 7 | 0 | 0 | 0 | 97 |
| 2. | Avispa Fukuoka | 44 | 0 | 0 | 0 | 21 | 15 | 8 | 0 | 0 | 0 | 78 |
| 3. | Kofu | 44 | 0 | 0 | 0 | 19 | 12 | 13 | 0 | 0 | 0 | 69 |
| 4. | Vegalta Sendai | 44 | 0 | 0 | 0 | 19 | 11 | 14 | 0 | 0 | 0 | 68 |
| 5. | Montedio Yamagata | 44 | 0 | 0 | 0 | 16 | 16 | 12 | 0 | 0 | 0 | 64 |
| 6. | Hokkaido Consadole Sapporo | 44 | 0 | 0 | 0 | 17 | 12 | 15 | 0 | 0 | 0 | 63 |
| 7. | Shonan Bellmare | 44 | 0 | 0 | 0 | 13 | 15 | 16 | 0 | 0 | 0 | 54 |
| 8. | Sagan Tosu | 44 | 0 | 0 | 0 | 14 | 10 | 20 | 0 | 0 | 0 | 52 |
| 9. | Tokushima | 44 | 0 | 0 | 0 | 12 | 16 | 16 | 0 | 0 | 0 | 52 |
| 10. | Mito | 44 | 0 | 0 | 0 | 13 | 13 | 18 | 0 | 0 | 0 | 52 |
| 11. | Yokohama FC | 44 | 0 | 0 | 0 | 10 | 15 | 19 | 0 | 0 | 0 | 45 |
| 12. | Kusatsu | 44 | 0 | 0 | 0 | 5 | 8 | 31 | 0 | 0 | 0 | 23 |