| # | Group 1 | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | Persiraja Aceh | 7 | 5 | 1 | 1 | 10:5 | 5 | 16 | |
| 2. | Bangka | 6 | 4 | 1 | 1 | 8:4 | 4 | 13 | |
| 3. | PSMS Medan | 5 | 4 | 0 | 1 | 10:3 | 7 | 12 | |
| 4. | Kepri Jaya | 6 | 3 | 2 | 1 | 11:5 | 6 | 11 | |
| 5. | PSPS Riau | 6 | 3 | 2 | 1 | 9:3 | 6 | 11 | |
| 6. | Langsa | 6 | 2 | 2 | 2 | 10:6 | 4 | 8 | |
| 7. | Pro Duta | 0 | 0 | 0 | 0 | 0:0 | 0 | 0 | |
| 8. | Persih Tembilahan | 6 | 0 | 0 | 6 | 3:26 | -23 | 0 | |
| # | Group 2 | MP | W | D | L | G | GD | Pts | Form |
| 1. | Persita | 7 | 6 | 1 | 0 | 13:3 | 10 | 19 | |
| 2. | RANS Nusantara | 7 | 6 | 1 | 0 | 12:4 | 8 | 19 | |
| 3. | Perserang Serang | 7 | 6 | 0 | 1 | 11:4 | 7 | 18 | |
| 4. | Persika Karawang | 7 | 5 | 1 | 1 | 10:6 | 4 | 16 | |
| 5. | Persikad | 7 | 3 | 2 | 2 | 10:8 | 2 | 11 | |
| 6. | PS Bengkulu | 7 | 3 | 2 | 2 | 5:3 | 2 | 11 | |
| 7. | Lampung Sakti | 7 | 3 | 1 | 3 | 8:5 | 3 | 10 | |
| 8. | Persikabo 1973 | 7 | 2 | 1 | 4 | 8:14 | -6 | 7 | |
| # | Group 3 | MP | W | D | L | G | GD | Pts | Form |
| 1. | PSS Sleman | 7 | 6 | 0 | 1 | 16:2 | 14 | 18 | |
| 2. | PSGC Ciamis | 7 | 6 | 0 | 1 | 13:5 | 8 | 18 | |
| 3. | PSCS Cilacap | 7 | 5 | 1 | 1 | 11:4 | 7 | 16 | |
| 4. | Persibat Batang | 7 | 5 | 1 | 1 | 8:1 | 7 | 16 | |
| 5. | Persibas Banyumas | 7 | 3 | 2 | 2 | 10:9 | 1 | 11 | |
| 6. | Persijap Jepara | 7 | 3 | 0 | 4 | 7:8 | -1 | 9 | |
| 7. | Persip P. | 7 | 2 | 3 | 2 | 4:7 | -3 | 9 | |
| 8. | Purbalingga | 7 | 1 | 1 | 5 | 3:10 | -7 | 4 | |
| # | Group 4 | MP | W | D | L | G | GD | Pts | Form |
| 1. | PSIS Semarang | 7 | 6 | 1 | 0 | 12:2 | 10 | 19 | |
| 2. | Persis Solo | 7 | 5 | 2 | 0 | 13:4 | 9 | 17 | |
| 3. | Persipur P. | 7 | 4 | 1 | 2 | 10:4 | 6 | 13 | |
| 4. | Rembang | 7 | 3 | 3 | 1 | 12:5 | 7 | 12 | |
| 5. | PPSM Magelang | 7 | 3 | 2 | 2 | 7:9 | -2 | 11 | |
| 6. | Sragen | 7 | 3 | 1 | 3 | 6:5 | 1 | 10 | |
| 7. | Pontianak | 7 | 2 | 2 | 3 | 5:8 | -3 | 8 | |
| 8. | Persiba Bantul | 7 | 0 | 3 | 4 | 4:8 | -4 | 3 | |
| # | Group 5 | MP | W | D | L | G | GD | Pts | Form |
| 1. | Dewa United | 7 | 7 | 0 | 0 | 23:7 | 16 | 21 | |
| 2. | Persebaya | 7 | 6 | 1 | 0 | 18:3 | 15 | 19 | |
| 3. | PSIM Yogyakarta | 7 | 6 | 1 | 0 | 15:5 | 10 | 19 | |
| 4. | Persatu Tuban | 7 | 5 | 2 | 0 | 14:5 | 9 | 17 | |
| 5. | Persepam Madura | 7 | 4 | 3 | 0 | 18:9 | 9 | 15 | |
| 6. | Pesinga Ngawi | 7 | 4 | 3 | 0 | 12:4 | 8 | 15 | |
| 7. | Madiun Putra | 7 | 4 | 1 | 2 | 12:11 | 1 | 13 | |
| 8. | PSBI Blitar | 7 | 3 | 1 | 3 | 5:8 | -3 | 10 | |
| # | Group 6 | MP | W | D | L | G | GD | Pts | Form |
| 1. | PSMP Mojokerto | 6 | 6 | 0 | 0 | 17:3 | 14 | 18 | |
| 2. | Kalteng Putra | 6 | 5 | 1 | 0 | 20:4 | 16 | 16 | |
| 3. | Persik Kediri | 6 | 5 | 1 | 0 | 15:4 | 11 | 16 | |
| 4. | Persewangi Banyuwangi | 6 | 5 | 0 | 1 | 10:3 | 7 | 15 | |
| 5. | PSBK Blitar | 6 | 3 | 3 | 0 | 14:7 | 7 | 12 | |
| 6. | Perssu Madura United | 6 | 3 | 1 | 2 | 12:9 | 3 | 10 | |
| 7. | Sidoarjo United | 6 | 1 | 3 | 2 | 7:7 | 0 | 6 | |
| # | Group 7 | MP | W | D | L | G | GD | Pts | Form |
| 1. | Madura FC | 6 | 5 | 1 | 0 | 13:2 | 11 | 16 | |
| 2. | PS Hizbul Wathan | 6 | 5 | 1 | 0 | 10:4 | 6 | 16 | |
| 3. | Celebest | 6 | 4 | 2 | 0 | 9:0 | 9 | 14 | |
| 4. | PS Badung | 6 | 4 | 2 | 0 | 8:4 | 4 | 14 | |
| 5. | PS Sumbawa Barat | 6 | 3 | 1 | 2 | 6:7 | -1 | 10 | |
| 6. | Persekam Metro | 6 | 2 | 3 | 1 | 8:6 | 2 | 9 | |
| 7. | Persekap Kota Pasuruan | 6 | 2 | 1 | 3 | 8:7 | 1 | 7 | |
| # | Group 8 | MP | W | D | L | G | GD | Pts | Form |
| 1. | PSBS Biak Numfor | 5 | 3 | 1 | 1 | 12:6 | 6 | 10 | |
| 2. | Persiwa Wamena | 5 | 3 | 1 | 1 | 7:4 | 3 | 10 | |
| 3. | Yahukimo | 5 | 3 | 1 | 1 | 7:4 | 3 | 10 | |
| 4. | Persigubin Gunung | 5 | 2 | 2 | 1 | 7:2 | 5 | 8 | |
| 5. | Perseka Kaimana | 5 | 1 | 3 | 1 | 2:2 | 0 | 6 | |
| 6. | Persbul Buol | 5 | 0 | 0 | 5 | 3:14 | -11 | 0 |