| # | Group 1 | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | PSPS Riau | 6 | 4 | 2 | 0 | 12:5 | 7 | 14 | |
| 2. | PSMS Medan | 7 | 3 | 2 | 2 | 7:3 | 4 | 11 | |
| 3. | Kepri Jaya | 6 | 2 | 1 | 3 | 8:7 | 1 | 7 | |
| 4. | Persiraja Aceh | 5 | 1 | 3 | 1 | 10:4 | 6 | 6 | |
| 5. | Bangka | 6 | 2 | 0 | 4 | 9:13 | -4 | 6 | |
| 6. | Langsa | 6 | 1 | 0 | 5 | 5:10 | -5 | 3 | |
| 7. | Pro Duta | 0 | 0 | 0 | 0 | 0:0 | 0 | 0 | |
| 8. | Persih Tembilahan | 6 | 0 | 0 | 6 | 1:19 | -18 | 0 | |
| # | Group 2 | MP | W | D | L | G | GD | Pts | Form |
| 1. | Persita | 7 | 3 | 2 | 2 | 5:4 | 1 | 11 | |
| 2. | RANS Nusantara | 7 | 2 | 2 | 3 | 5:6 | -1 | 8 | |
| 3. | Persikad | 7 | 2 | 1 | 4 | 4:7 | -3 | 7 | |
| 4. | PS Bengkulu | 7 | 2 | 0 | 5 | 7:10 | -3 | 6 | |
| 5. | Perserang Serang | 7 | 2 | 0 | 5 | 10:14 | -4 | 6 | |
| 6. | Lampung Sakti | 7 | 2 | 0 | 5 | 7:12 | -5 | 6 | |
| 7. | Persika Karawang | 7 | 0 | 3 | 4 | 4:10 | -6 | 3 | |
| 8. | Persikabo 1973 | 7 | 0 | 1 | 6 | 5:14 | -9 | 1 | |
| # | Group 3 | MP | W | D | L | G | GD | Pts | Form |
| 1. | PSS Sleman | 7 | 5 | 1 | 1 | 11:4 | 7 | 16 | |
| 2. | Persibas Banyumas | 7 | 4 | 0 | 3 | 9:8 | 1 | 12 | |
| 3. | Persibat Batang | 7 | 2 | 2 | 3 | 7:6 | 1 | 8 | |
| 4. | PSCS Cilacap | 7 | 2 | 2 | 3 | 4:5 | -1 | 8 | |
| 5. | PSGC Ciamis | 7 | 1 | 2 | 4 | 5:12 | -7 | 5 | |
| 6. | Persip P. | 7 | 1 | 1 | 5 | 3:12 | -9 | 4 | |
| 7. | Purbalingga | 7 | 1 | 0 | 6 | 5:13 | -8 | 3 | |
| 8. | Persijap Jepara | 7 | 1 | 0 | 6 | 2:12 | -10 | 3 | |
| # | Group 4 | MP | W | D | L | G | GD | Pts | Form |
| 1. | PSIS Semarang | 7 | 5 | 1 | 1 | 14:5 | 9 | 16 | |
| 2. | Persis Solo | 7 | 4 | 2 | 1 | 8:3 | 5 | 14 | |
| 3. | Rembang | 7 | 3 | 3 | 1 | 6:3 | 3 | 12 | |
| 4. | Sragen | 7 | 2 | 1 | 4 | 5:8 | -3 | 7 | |
| 5. | Persipur P. | 7 | 1 | 2 | 4 | 5:11 | -6 | 5 | |
| 6. | Pontianak | 7 | 0 | 3 | 4 | 4:14 | -10 | 3 | |
| 7. | PPSM Magelang | 7 | 0 | 2 | 5 | 3:11 | -8 | 2 | |
| 8. | Persiba Bantul | 7 | 0 | 1 | 6 | 0:14 | -14 | 1 | |
| # | Group 5 | MP | W | D | L | G | GD | Pts | Form |
| 1. | Persebaya | 7 | 2 | 4 | 1 | 9:8 | 1 | 10 | |
| 2. | Dewa United | 7 | 2 | 1 | 4 | 12:15 | -3 | 7 | |
| 3. | Persepam Madura | 7 | 1 | 0 | 6 | 7:14 | -7 | 3 | |
| 4. | PSIM Yogyakarta | 7 | 0 | 2 | 5 | 6:13 | -7 | 2 | |
| 5. | Madiun Putra | 7 | 0 | 2 | 5 | 4:14 | -10 | 2 | |
| 6. | Persatu Tuban | 7 | 0 | 1 | 6 | 7:15 | -8 | 1 | |
| 7. | PSBI Blitar | 7 | 0 | 1 | 6 | 3:18 | -15 | 1 | |
| 8. | Pesinga Ngawi | 7 | 0 | 1 | 6 | 4:20 | -16 | 1 | |
| # | Group 6 | MP | W | D | L | G | GD | Pts | Form |
| 1. | PSBK Blitar | 6 | 2 | 0 | 4 | 11:18 | -7 | 6 | |
| 2. | Kalteng Putra | 6 | 1 | 2 | 3 | 3:9 | -6 | 5 | |
| 3. | PSMP Mojokerto | 6 | 1 | 1 | 4 | 8:15 | -7 | 4 | |
| 4. | Persik Kediri | 6 | 1 | 1 | 4 | 3:11 | -8 | 4 | |
| 5. | Persewangi Banyuwangi | 6 | 0 | 3 | 3 | 7:13 | -6 | 3 | |
| 6. | Sidoarjo United | 6 | 0 | 1 | 5 | 3:13 | -10 | 1 | |
| 7. | Perssu Madura United | 6 | 0 | 1 | 5 | 2:16 | -14 | 1 | |
| # | Group 7 | MP | W | D | L | G | GD | Pts | Form |
| 1. | PS Hizbul Wathan | 6 | 3 | 1 | 2 | 10:5 | 5 | 10 | |
| 2. | Madura FC | 6 | 1 | 3 | 2 | 6:6 | 0 | 6 | |
| 3. | Persekam Metro | 6 | 1 | 3 | 2 | 4:5 | -1 | 6 | |
| 4. | Celebest | 6 | 1 | 2 | 3 | 3:7 | -4 | 5 | |
| 5. | Persekap Kota Pasuruan | 6 | 0 | 1 | 5 | 5:12 | -7 | 1 | |
| 6. | PS Badung | 6 | 0 | 1 | 5 | 1:10 | -9 | 1 | |
| 7. | PS Sumbawa Barat | 6 | 0 | 0 | 6 | 1:17 | -16 | 0 | |
| # | Group 8 | MP | W | D | L | G | GD | Pts | Form |
| 1. | Persiwa Wamena | 5 | 3 | 1 | 1 | 7:4 | 3 | 10 | |
| 2. | PSBS Biak Numfor | 5 | 2 | 2 | 1 | 5:3 | 2 | 8 | |
| 3. | Yahukimo | 5 | 2 | 2 | 1 | 5:4 | 1 | 8 | |
| 4. | Persigubin Gunung | 5 | 1 | 3 | 1 | 7:6 | 1 | 6 | |
| 5. | Perseka Kaimana | 5 | 2 | 0 | 3 | 6:6 | 0 | 6 | |
| 6. | Persbul Buol | 5 | 0 | 0 | 5 | 2:15 | -13 | 0 |