| # | Team | MP | W/W | W/D | W/L | D/W | D/D | D/L | L/W | L/D | L/L | Pts |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | Kashiwa Reysol | 36 | 11 | 1 | 0 | 11 | 10 | 0 | 1 | 0 | 2 | 80 |
| 2. | Kofu | 36 | 8 | 4 | 1 | 10 | 9 | 1 | 1 | 0 | 2 | 70 |
| 3. | Avispa Fukuoka | 36 | 9 | 0 | 0 | 7 | 5 | 1 | 5 | 1 | 8 | 69 |
| 4. | Chiba | 36 | 12 | 1 | 1 | 4 | 4 | 4 | 2 | 2 | 6 | 61 |
| 5. | Verdy | 36 | 9 | 0 | 2 | 7 | 6 | 4 | 1 | 1 | 6 | 58 |
| 6. | Yokohama FC | 36 | 12 | 0 | 2 | 4 | 4 | 5 | 0 | 2 | 7 | 54 |
| 7. | Kumamoto | 36 | 6 | 0 | 0 | 7 | 11 | 4 | 1 | 1 | 6 | 54 |
| 8. | Tokushima | 36 | 9 | 1 | 0 | 5 | 5 | 10 | 1 | 0 | 5 | 51 |
| 9. | Sagan Tosu | 36 | 7 | 1 | 1 | 4 | 8 | 7 | 2 | 3 | 3 | 51 |
| 10. | Tochigi SC | 36 | 5 | 2 | 2 | 8 | 6 | 6 | 1 | 0 | 6 | 50 |
| 11. | Ehime | 36 | 8 | 1 | 1 | 4 | 11 | 5 | 0 | 0 | 6 | 48 |
| 12. | Kusatsu | 36 | 5 | 2 | 2 | 7 | 3 | 6 | 2 | 1 | 8 | 48 |
| 13. | Hokkaido Consadole Sapporo | 36 | 6 | 4 | 0 | 4 | 8 | 7 | 1 | 1 | 5 | 46 |
| 14. | Gifu | 36 | 7 | 0 | 2 | 5 | 5 | 7 | 1 | 1 | 8 | 45 |
| 15. | Oita Trinita | 36 | 6 | 3 | 2 | 3 | 6 | 3 | 1 | 2 | 10 | 41 |
| 16. | Mito | 36 | 6 | 0 | 0 | 2 | 10 | 9 | 0 | 4 | 5 | 38 |
| 17. | Okayama | 36 | 1 | 1 | 1 | 7 | 7 | 4 | 0 | 0 | 15 | 32 |
| 18. | Toyama | 36 | 4 | 1 | 4 | 1 | 2 | 8 | 3 | 1 | 12 | 28 |
| 19. | Giravanz Kitakyushu | 36 | 1 | 1 | 2 | 0 | 8 | 9 | 0 | 3 | 12 | 15 |