| # | Team | MP | W/W | W/D | W/L | D/W | D/D | D/L | L/W | L/D | L/L | Pts |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | Vegalta Sendai | 51 | 16 | 1 | 1 | 14 | 9 | 4 | 2 | 0 | 4 | 106 |
| 2. | Cerezo Osaka | 51 | 14 | 3 | 1 | 16 | 7 | 5 | 1 | 1 | 3 | 104 |
| 3. | Shonan Bellmare | 51 | 17 | 1 | 2 | 12 | 8 | 6 | 0 | 2 | 3 | 98 |
| 4. | Kofu | 51 | 18 | 2 | 1 | 9 | 8 | 4 | 1 | 3 | 5 | 97 |
| 5. | Sagan Tosu | 51 | 10 | 2 | 0 | 13 | 10 | 4 | 2 | 1 | 9 | 88 |
| 6. | Hokkaido Consadole Sapporo | 51 | 13 | 4 | 0 | 6 | 10 | 6 | 2 | 2 | 8 | 79 |
| 7. | Verdy | 51 | 13 | 1 | 3 | 7 | 8 | 7 | 1 | 2 | 9 | 74 |
| 8. | Mito | 51 | 12 | 2 | 0 | 8 | 8 | 12 | 1 | 0 | 8 | 73 |
| 9. | Tokushima | 51 | 13 | 0 | 2 | 5 | 10 | 7 | 1 | 5 | 8 | 72 |
| 10. | Kusatsu | 51 | 11 | 4 | 1 | 6 | 6 | 9 | 1 | 1 | 12 | 65 |
| 11. | Avispa Fukuoka | 51 | 6 | 3 | 2 | 10 | 11 | 6 | 1 | 0 | 12 | 65 |
| 12. | Gifu | 51 | 7 | 2 | 0 | 8 | 9 | 8 | 1 | 3 | 13 | 62 |
| 13. | Toyama | 51 | 4 | 2 | 0 | 9 | 11 | 10 | 2 | 3 | 10 | 61 |
| 14. | Kumamoto | 51 | 9 | 4 | 0 | 6 | 2 | 5 | 1 | 4 | 20 | 58 |
| 15. | Ehime | 51 | 9 | 2 | 3 | 2 | 6 | 12 | 1 | 3 | 13 | 47 |
| 16. | Yokohama FC | 51 | 6 | 1 | 1 | 5 | 7 | 12 | 0 | 3 | 16 | 44 |
| 17. | Tochigi SC | 51 | 4 | 3 | 1 | 4 | 7 | 12 | 0 | 3 | 17 | 37 |
| 18. | Okayama | 51 | 4 | 1 | 1 | 3 | 9 | 14 | 1 | 2 | 16 | 36 |